PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_021163
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 520aa    MW: 55933.8 Da    PI: 5.6052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_021163genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30268326259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  DCAR_021163 268 TDGCQWRKYGQKIAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRSILITTYEGNHNHP 326
                  7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33252328IPR003657WRKY domain
SuperFamilySSF1182906.02E-28260328IPR003657WRKY domain
PROSITE profilePS5081129.93262328IPR003657WRKY domain
SMARTSM007742.2E-36267327IPR003657WRKY domain
PfamPF031064.9E-27269326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDSSPPAETF HFAVNINRAT VDHQNRPDEM DFFANNKIRD ENEQSKVTDN TSDADNLRGF  60
SPPADLDSNV NTGLHLLTTN TCSDHSVVDD GISPNAEDKR SKNEVAALQA DLERTNIENR  120
RLKDLLNQVT NNYNTLQMHL VTITQQQGQK GADQELEQFS DHQPNSKAEV ARQNSSAGMV  180
PRQFINLGLG GQISGETDRA SSPERGDPSN TDNLSKEDDA DPGSHNMWMG GNKVSRLNPP  240
KSVDEATEAT IRKARVSVRA RSEAPMMTDG CQWRKYGQKI AKGNPCPRAY YRCTMAAGCP  300
VRKQVQRCAE DRSILITTYE GNHNHPLPPA AMAMASTTSS AARMLLSGSM PSADGIMNPN  360
VLARTLLPCS SSMATISASA PFPTVTLDLT QNPNPLQLQK PQNQFQLPFN NTQQNPLSGV  420
SPAALLPQIF GQALYNQSKF SGLQMSQDME AGTSQLGQQA PPLDHSLTDT VNALTTDPNF  480
TAALAAAISS IFGGGSHPNG SPSSNVNVSQ STTSNNNGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22254330176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364165.10.0PREDICTED: WRKY transcription factor 6-like
SwissprotQ9C5191e-139WRKY6_ARATH; WRKY transcription factor 6
TrEMBLM1B7H20.0M1B7H2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000388520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-125WRKY family protein